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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
82
DNA accessibility
43
DNA binding
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
266
October, 2019
214
June, 2019
197
May, 2021
151
May, 2020
136
August, 2021
119
February, 2021
118
May, 2019
104
August, 2017
97
February, 2023
82
November, 2017
80
April, 2019
42
May, 2022
41
July, 2019
40
March, 2020
40
May, 2024
11
May, 2023
10
April, 2020
8
January, 2021
6
November, 2019
6
October, 2017
3
January, 2018
2
December, 2019
2
November, 2020
1
March, 2023
1
October, 2022
Available data
106
bed narrowPeak
64
xls
34
bam
32
bigWig
24
tagAlign
5
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
135
Homo sapiens
Biosample type
72
tissue
35
in vitro differentiated cells
25
cell line
4
primary cell
Organ
73
kidney
26
liver
6
epithelium
5
connective tissue
pancreas
1
adipose tissue
Project
136
AMP
Genome assembly (visualization)
90
GRCh38
45
hg19
Lab
71
Katalin Susztak, Upenn
36
AMP-T2D consortium
25
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
assay_slims!
Transcription
organ_slims!
pancreas
BIOSAMPLE
ASSAY
136 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
2
1
1
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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