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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
200
DNase-seq
57
snATAC-seq
3
FAIRE-seq
Assay category
1547
Transcription
974
DNA binding
260
DNA accessibility
76
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
22
May, 2022
16
January, 2021
11
October, 2019
10
April, 2020
6
August, 2021
2
August, 2017
2
February, 2023
2
July, 2019
1
August, 2022
1
November, 2020
Available data
214
bam
214
bed narrowPeak
214
bigBed narrowPeak
214
bigWig
206
bed broadPeak
206
bigBed broadPeak
205
bed bed3+
fastq
21
zippedFastqFolder
1
tar
1
txt
Organism
259
Homo sapiens
Biosample type
198
tissue
60
primary cell
2
cell line
Organ
88
kidney
36
limb
34
musculature of body
31
brain
30
heart
20
epithelium
18
ureter
16
pancreas
12
vasculature
10
blood vessel
10
lung
8
blood
8
bodily fluid
7
connective tissue
4
artery
4
eye
3
liver
3
vein
2
nerve
1
adipose tissue
Project
211
AMP
21
HPAP
18
T1D
10
LungMap
Genome assembly (visualization)
196
GRCh38
178
hg19
Lab
205
AMP-T2D consortium
21
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
2
audit script error
files.file_type!
fastq
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
260 results
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Clear Filters
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
13
6
1
heart
18
muscle of arm
17
muscle of leg
13
brain
12
+ See 40 more…
primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
cardiac fibroblast
3
endothelial cell of umbilical vein
2
1
kidney tubule cell
3
+ See 20 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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