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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ATAC-seq
7
DNase-seq
Assay category
478
Transcription
63
DNA binding
30
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Date released
10
February, 2023
6
June, 2019
5
February, 2021
3
October, 2019
2
August, 2021
2
November, 2020
1
January, 2018
1
November, 2019
Available data
18
bigWig
17
bed narrowPeak
14
bam
13
bigBed narrowPeak
12
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
fastq
Organism
30
Homo sapiens
Biosample type
17
in vitro differentiated cells
8
primary cell
5
tissue
Organ
163
kidney
77
heart
73
pancreas
58
vasculature
56
blood vessel
52
epithelium
49
artery
44
limb
34
brain
34
musculature of body
32
eye
30
connective tissue
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
5
adipose tissue
5
liver
3
nerve
3
vein
1
pituitary gland
1
skin of body
Project
30
AMP
Genome assembly (visualization)
29
hg19
10
GRCh38
Lab
28
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
month_released!
May, 2022
BIOSAMPLE
ASSAY
30 results
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ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
8
chondrocyte
5
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
cardiac fibroblast
3
osteoblast
2
1
brain pericyte
1
hepatic stellate cell
1
tissue
adipose tissue
3
adipose tissue(adipose white tissue)
1
omental fat pad
1
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