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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
single cell RNA-seq
44
ATAC-seq
41
WGBS
21
snATAC-seq
3
Hi-C
2
Capture-C
Assay category
65
DNA accessibility
51
Transcription
41
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
18
September, 2020
4
August, 2021
3
February, 2023
3
October, 2022
Available data
fastq
153
zippedFastqFolder
15
bigWig
6
tsv
4
bed narrowPeak
3
bed bedgraph
3
bedpe bed3+
3
cool
3
hic
3
txt
2
bed bed3+
Organism
162
Homo sapiens
Biosample type
155
primary cell
7
in vitro differentiated cells
Organ
83
epithelium
83
pancreas
4
connective tissue
Project
155
HPAP
7
AMP
Genome assembly (visualization)
10
hg19
Lab
2746
AMP-T2D consortium
319
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
3
audit script error
1
inconsistent ontology term
files.file_type!
fastq
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
162 results
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Clear Filters
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
Hi-C
Capture-C
primary cell
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
pancreatic acinar cell
4
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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