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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
Assay category
195
DNA accessibility
Target of assay
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
Date released
187
June, 2019
7
October, 2019
1
November, 2020
Available data
2608
bam
2301
bigWig
1600
tsv
fastq
967
bed narrowPeak
651
bigBed narrowPeak
257
bed broadPeak
255
bigBed broadPeak
247
bed bed3+
160
txt
132
zippedFastqFolder
77
tagAlign
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
195
Homo sapiens
Biosample type
167
tissue
27
primary cell
1
cell line
Organ
78
kidney
36
limb
33
musculature of body
30
brain
30
heart
18
ureter
16
epithelium
11
vasculature
9
blood vessel
7
connective tissue
5
pancreas
4
artery
4
eye
2
liver
2
nerve
2
vein
1
adipose tissue
Project
195
AMP
Genome assembly (visualization)
195
GRCh38
172
hg19
Lab
195
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
assay_title!
snATAC-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
195 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 36 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 17 more…
cell line
Panc1
1
See all biosamples
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