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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
1014
ChIP-seq
470
ATAC-seq
235
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
56
pCHi-C
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
DNA methylation
Date released
15
July, 2019
2
August, 2017
Available data
19
bed bedMethyl
19
bigBed bedMethyl
fastq
Organism
17
Homo sapiens
Biosample type
9
primary cell
8
tissue
Organ
6
epithelium
4
kidney
3
musculature of body
2
brain
2
heart
2
pancreas
1
connective tissue
1
eye
1
liver
1
pericardium
1
vasculature
Project
17
AMP
Genome assembly (visualization)
15
hg19
Lab
17
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
assay_title!
shRNA RNA-seq
BIOSAMPLE
ASSAY
17 results
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RRBS
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 4 more…
tissue
skeletal muscle tissue
2
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 2 more…
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