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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1290
total RNA-seq
1014
ChIP-seq
470
ATAC-seq
235
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
56
pCHi-C
33
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
Transcription
17
DNA methylation
Date released
33
July, 2019
2
August, 2017
1
March, 2023
Available data
19
bed bedMethyl
19
bigBed bedMethyl
18
bam
18
bigWig
18
tsv
fastq
Organism
35
Homo sapiens
Biosample type
24
tissue
11
primary cell
1
stem cell
Organ
6
brain
6
epithelium
5
kidney
5
musculature of body
4
connective tissue
4
liver
4
pancreas
3
adipose tissue
3
heart
1
eye
1
pericardium
1
vasculature
Project
35
AMP
1
community
Genome assembly (visualization)
33
hg19
18
GRCh38
Lab
35
AMP-T2D consortium
1
Anna Gloyn, Oxford
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
36 results
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small RNA-seq
RRBS
CRISPR RNA-seq
tissue
skeletal muscle tissue
1
2
body of pancreas
2
right lobe of liver
2
brain
1
cerebellum (Hemisphere)
1
+ See 15 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 6 more…
stem cell
SB Ad3.1
1
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