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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1289
total RNA-seq
1014
ChIP-seq
470
ATAC-seq
235
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
56
pCHi-C
33
Hi-C
18
small RNA-seq
16
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
16
DNA methylation
Date released
14
July, 2019
2
August, 2017
Available data
18
bed bedMethyl
18
bigBed bedMethyl
fastq
Organism
16
Homo sapiens
Biosample type
9
primary cell
7
tissue
Organ
6
epithelium
4
kidney
3
musculature of body
2
brain
2
heart
2
pancreas
1
connective tissue
1
eye
1
liver
pericardium
1
vasculature
Project
16
AMP
Genome assembly (visualization)
14
hg19
Lab
16
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
organ_slims!
pericardium
BIOSAMPLE
ASSAY
16 results
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RRBS
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 4 more…
tissue
skeletal muscle tissue
2
brain
1
heart left ventricle
1
islet of Langerhans
1
kidney
1
+ See 1 more…
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