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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
938
ChIP-seq
892
total RNA-seq
466
ATAC-seq
235
single cell RNA-seq
199
DNase-seq
86
RNA microarray
57
snATAC-seq
55
WGBS
55
pCHi-C
33
Hi-C
17
RRBS
15
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
55
DNA methylation
Date released
41
May, 2022
12
July, 2019
2
August, 2017
Available data
41
zippedFastqFolder
16
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
fastq
6
tsv
Organism
55
Homo sapiens
Biosample type
41
primary cell
14
tissue
Organ
41
epithelium
41
pancreas
8
heart
adipose tissue
3
connective tissue
3
liver
2
blood vessel
2
vasculature
1
limb
1
musculature of body
Project
41
HPAP
14
AMP
Genome assembly (visualization)
8
GRCh38
Lab
41
Klaus Kaestner, Upenn
14
AMP-T2D consortium
files.file_type!
fastq
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
55 results
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WGBS
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
aorta
2
heart right ventricle
2
liver
2
heart
1
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