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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
2
single cell RNA-seq
1
snATAC-seq
Assay category
4
3D chromatin structure
2
Transcription
1
DNA accessibility
Date released
3
October, 2022
2
December, 2019
August, 2022
1
May, 2022
1
October, 2019
Available data
fastq
4
hic
3
bedpe bed3+
3
cool
2
tsv
1
bed bed3+
1
txt
Organism
7
Homo sapiens
Biosample type
4
primary cell
2
in vitro differentiated cells
1
tissue
Organ
kidney
5
epithelium
3
pancreas
1
blood vessel
1
musculature of body
1
vasculature
1
vein
Project
4
AMP
3
HPAP
Genome assembly (visualization)
5
hg19
Lab
4
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
319
inconsistent ontology term
7
audit script error
1
inconsistent replicate
files.file_type!
fastq
organ_slims!
kidney
month_released!
August, 2022
BIOSAMPLE
ASSAY
7 results
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Hi-C
single cell RNA-seq
snATAC-seq
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
tissue
skeletal muscle tissue
1
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