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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
total RNA-seq
88
ChIP-seq
50
ATAC-seq
49
snATAC-seq
41
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
111
Transcription
99
DNA accessibility
88
DNA binding
41
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
134
May, 2022
102
May, 2021
47
September, 2023
19
April, 2020
18
February, 2023
18
September, 2020
16
January, 2021
5
March, 2023
3
March, 2020
3
October, 2022
Available data
153
zippedFastqFolder
98
bigWig
88
bam
88
bed narrowPeak
84
tagAlign
fastq
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
360
Homo sapiens
Biosample type
264
primary cell
90
tissue
9
cell line
2
stem cell
Organ
108
pancreas
85
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
155
HPAP
139
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
91
hg19
89
GRCh38
Lab
155
Klaus Kaestner, Upenn
135
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
3
audit script error
3
inconsistent ontology term
files.file_type!
fastq
award.project!
AMP
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
365 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
84
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
peripheral blood mononuclear cell
8
+ See 16 more…
tissue
kidney
47
islet of Langerhans
2
11
6
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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