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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
105
total RNA-seq
88
ChIP-seq
50
ATAC-seq
49
snATAC-seq
41
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
siRNA RNA-seq
Assay category
215
Transcription
99
DNA accessibility
88
DNA binding
41
DNA methylation
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
134
May, 2022
47
September, 2023
45
May, 2020
23
February, 2023
19
April, 2020
18
September, 2020
16
January, 2021
7
March, 2020
4
March, 2023
Available data
196
bigWig
186
bam
153
zippedFastqFolder
fastq
104
tsv
88
bed narrowPeak
84
tagAlign
1
hic
Organism
462
Homo sapiens
Biosample type
357
primary cell
97
tissue
10
cell line
2
stem cell
Organ
114
pancreas
84
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
244
T1D
152
HPAP
47
KPMP
19
LungMap
3
community
1
ITG
Genome assembly (visualization)
187
GRCh38
186
hg19
Lab
236
Kyle Gaulton, UCSD
152
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
3
Anna Gloyn, Oxford
1
ITG
Audit category:
9
inconsistent ontology term
audit script error
files.file_type!
fastq
award.project!
AMP
assay_title!
siRNA RNA-seq
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
466 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
peripheral blood mononuclear cell
8
+ See 36 more…
tissue
kidney
47
islet of Langerhans
7
2
11
6
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
stem cell
SB Ad3.1
1
1
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