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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ATAC-seq
41
WGBS
10
snATAC-seq
9
total RNA-seq
4
ChIP-seq
3
Hi-C
Assay category
60
DNA accessibility
41
DNA methylation
9
Transcription
4
DNA binding
3
3D chromatin structure
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
80
May, 2022
18
February, 2023
8
January, 2021
7
March, 2020
3
October, 2022
1
May, 2021
Available data
80
zippedFastqFolder
fastq
16
bigWig
8
tsv
6
bam
4
bed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
117
Homo sapiens
Biosample type
83
primary cell
30
tissue
4
cell line
Organ
117
pancreas
87
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
83
HPAP
34
T1D
Genome assembly (visualization)
9
hg19
6
GRCh38
Lab
83
Klaus Kaestner, Upenn
26
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
3
audit script error
files.file_type!
fastq
award.project!
AMP
BIOSAMPLE
ASSAY
117 results
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ATAC-seq
WGBS
snATAC-seq
total RNA-seq
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
11
6
7
2
pancreas
4
cell line
EndoC_BH1
2
2
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