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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
85
ChIP-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
101
Transcription
85
DNA binding
29
DNA accessibility
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
Date released
153
May, 2021
45
May, 2020
23
February, 2023
16
January, 2021
March, 2020
Available data
181
bam
181
bigWig
96
tsv
85
bed narrowPeak
84
tagAlign
Organism
237
Homo sapiens
Biosample type
204
primary cell
27
tissue
6
cell line
Organ
27
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
epithelium
1
thymus
Project
3046
AMP
237
T1D
155
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
181
GRCh38
181
hg19
Lab
236
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
files.file_type!
fastq
month_released!
March, 2020
BIOSAMPLE
ASSAY
237 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
5
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
1
3
2
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