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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
9
total RNA-seq
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
18
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
31
August, 2021
2
February, 2021
1
May, 2020
Available data
fastq
366
bam
332
bigWig
308
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
15
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
34
Homo sapiens
Biosample type
34
cell line
Organ
34
liver
Project
34
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
31
Bing Ren, UCSD
3
AMP-T2D consortium
Audit category:
1
inconsistent replicate
files.file_type!
fastq
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
total RNA-seq
STARR-seq
pCHi-C
ATAC-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
2
1
1
1
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