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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
total RNA-seq
90
ChIP-seq
13
ATAC-seq
Assay category
169
Transcription
90
DNA binding
13
DNA accessibility
Target of assay
85
histone
85
histone modification
44
broad histone mark
41
narrow histone mark
4
transcription factor
1
control
Date released
477
February, 2021
283
May, 2020
272
May, 2021
221
October, 2019
218
June, 2019
120
May, 2019
114
July, 2018
82
July, 2019
79
April, 2019
69
November, 2017
44
November, 2019
41
August, 2021
16
October, 2018
11
March, 2020
6
November, 2020
5
April, 2018
5
December, 2019
1
August, 2017
Available data
298
bigWig
272
bam
169
tsv
132
bed narrowPeak
90
tagAlign
2
bed bed3+
Organism
272
Homo sapiens
Biosample type
149
primary cell
85
in vitro differentiated cells
38
tissue
cell line
Organ
39
pancreas
5
epithelium
3
heart
2
embryo
1
connective tissue
Project
137
AMP
135
T1D
Genome assembly (visualization)
271
GRCh38
271
hg19
Lab
137
AMP-T2D consortium
135
Kyle Gaulton, UCSD
Audit category:
68
inconsistent ontology term
files.file_type!
fastq
biosample_type!
cell line
BIOSAMPLE
ASSAY
272 results
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total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
51
84
13
embryonic stem cell
1
in vitro differentiated cells
cardiomyocytes
59
3
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
+ See 9 more…
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
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