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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
348
ChIP-seq
Assay category
348
DNA binding
Target of assay
283
histone
283
histone modification
159
narrow histone mark
124
broad histone mark
61
control
4
transcription factor
Date released
90
May, 2021
66
August, 2017
66
November, 2017
50
May, 2020
49
October, 2019
21
August, 2021
6
October, 2017
Available data
2810
bam
2647
bigWig
1481
tsv
1413
bed narrowPeak
fastq
687
bigBed narrowPeak
378
tagAlign
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
348
Homo sapiens
Biosample type
223
tissue
85
primary cell
40
in vitro differentiated cells
cell line
Organ
110
brain
71
liver
22
connective tissue
15
musculature of body
12
pancreas
8
adipose tissue
4
epithelium
1
pituitary gland
Project
264
AMP
84
T1D
Genome assembly (visualization)
206
GRCh38
194
hg19
Lab
264
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
fastq
bed bed3+
biosample_type!
cell line
BIOSAMPLE
ASSAY
348 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 42 more…
primary cell
monocyte
84
hepatocyte
1
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
See all biosamples
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