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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
Assay category
267
DNA binding
Target of assay
202
histone
202
histone modification
121
narrow histone mark
81
broad histone mark
61
control
4
transcription factor
Date released
66
August, 2017
66
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
6
May, 2021
6
October, 2017
Available data
2605
bam
2351
bigWig
1378
tsv
1153
bed narrowPeak
fastq
687
bigBed narrowPeak
294
tagAlign
266
bed bed3+
261
bed broadPeak
226
bigBed broadPeak
94
txt
35
bed bedMethyl
35
bigBed bedMethyl
17
bedpe bed3+
15
hic
11
bed bed3
8
csv
4
bed bedgraph
4
hdf5
2
ibed
1
tagAlign bed3+
1
tar
Organism
267
Homo sapiens
Biosample type
223
tissue
40
in vitro differentiated cells
cell line
4
primary cell
Organ
110
brain
74
liver
22
connective tissue
15
musculature of body
12
pancreas
8
adipose tissue
7
epithelium
1
pituitary gland
Project
267
AMP
Genome assembly (visualization)
125
GRCh38
113
hg19
Lab
267
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
fastq
biosample_type!
cell line
BIOSAMPLE
ASSAY
267 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 42 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
primary cell
hepatocyte
4
See all biosamples
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