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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
ChIP-seq
Assay category
241
DNA binding
Target of assay
194
histone
194
histone modification
108
narrow histone mark
86
broad histone mark
43
control
4
transcription factor
Date released
90
May, 2021
66
August, 2017
50
May, 2020
24
August, 2021
11
October, 2019
Available data
2567
bam
2425
bigWig
1455
tsv
1210
bed narrowPeak
fastq
560
bigBed narrowPeak
260
tagAlign
235
bed bed3+
216
bed broadPeak
188
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
10
bed bed3
8
csv
7
bed bedgraph
3
cool
2
ibed
1
bedpe
1
hdf5
1
tar
Organism
241
Homo sapiens
Biosample type
113
tissue
88
primary cell
40
in vitro differentiated cells
cell line
Organ
brain
74
liver
22
connective tissue
15
musculature of body
12
pancreas
8
adipose tissue
7
epithelium
1
pituitary gland
Project
157
AMP
84
T1D
Genome assembly (visualization)
160
hg19
133
GRCh38
Lab
157
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
fastq
biosample_type!
cell line
organ_slims!
brain
BIOSAMPLE
ASSAY
241 results
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Clear Filters
ChIP-seq
tissue
liver
70
skeletal muscle tissue
15
islet of Langerhans
9
subcutaneous abdominal adipose tissue
8
gyrus rectus
2
+ See 8 more…
primary cell
monocyte
84
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
See all biosamples
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