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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
53
total RNA-seq
8
single cell RNA-seq
3
ATAC-seq
Assay category
61
Transcription
3
DNA accessibility
Date released
84
February, 2021
57
August, 2021
7
February, 2023
Available data
2810
bam
2647
bigWig
1472
tsv
1413
bed narrowPeak
fastq
687
bigBed narrowPeak
378
tagAlign
269
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
154
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
18
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
4
hdf5
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
148
Homo sapiens
Biosample type
145
tissue
3
in vitro differentiated cells
cell line
Organ
88
bone element
57
kidney
4
skeleton
Project
148
AMP
Genome assembly (visualization)
3
hg19
Lab
88
AMP-T2D consortium
57
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
audit script error
files.file_type!
fastq
biosample_type!
cell line
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
148 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
tissue
bone element
84
kidney
49
8
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 1 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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