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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
total RNA-seq
77
ATAC-seq
43
ChIP-seq
41
WGBS
11
snATAC-seq
7
Hi-C
5
single cell RNA-seq
4
DNase-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
193
Transcription
92
DNA accessibility
43
DNA binding
43
DNA methylation
7
3D chromatin structure
Target of assay
32
histone
32
histone modification
16
broad histone mark
16
narrow histone mark
10
control
1
transcription factor
Date released
118
July, 2018
80
May, 2022
40
May, 2021
39
November, 2019
20
August, 2017
18
February, 2023
16
October, 2018
9
March, 2020
8
January, 2021
6
July, 2019
5
April, 2018
4
June, 2019
4
March, 2019
November, 2020
3
October, 2019
3
October, 2022
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
626
bam
567
bigWig
fastq
383
tsv
193
bed narrowPeak
84
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
20
bed broadPeak
19
tagAlign
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
bigBed broadPeak
6
hic
6
txt
3
cool
1
bedpe
Organism
379
Homo sapiens
Biosample type
288
tissue
88
primary cell
cell line
3
in vitro differentiated cells
Organ
577
connective tissue
447
adipose tissue
379
pancreas
335
kidney
327
heart
292
liver
265
brain
188
epithelium
164
vasculature
161
blood vessel
159
bone element
122
limb
94
musculature of body
75
artery
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
embryo
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
266
AMP
83
HPAP
30
T1D
Genome assembly (visualization)
237
hg19
223
GRCh38
Lab
263
AMP-T2D consortium
83
Klaus Kaestner, Upenn
27
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
4
audit script error
files.file_type!
fastq
biosample_type!
cell line
month_released!
November, 2020
BIOSAMPLE
ASSAY
379 results
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total RNA-seq
ATAC-seq
ChIP-seq
WGBS
snATAC-seq
Hi-C
single cell RNA-seq
DNase-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
181
38
22
7
3
1
endocrine pancreas
16
pancreas
2
4
1
2
1
1
body of pancreas
3
2
2
2
primary cell
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
pancreatic acinar cell
4
1
3
pancreatic ductal cell
1
pancreatic stellate cell
1
in vitro differentiated cells
pancreatic PP cell
3
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