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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1169
total RNA-seq
896
ChIP-seq
428
ATAC-seq
233
single cell RNA-seq
200
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
52
pCHi-C
29
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1169
Transcription
Date released
523
February, 2021
190
May, 2020
118
July, 2018
98
May, 2021
67
August, 2021
44
July, 2019
28
October, 2019
25
February, 2020
20
May, 2022
20
November, 2019
13
February, 2023
13
March, 2020
5
December, 2019
4
November, 2020
1
May, 2023
Available data
1194
tsv
1161
bam
1157
bigWig
fastq
59
txt
2
bed bed3+
Organism
1169
Homo sapiens
Biosample type
934
tissue
127
primary cell
in vitro differentiated cells
108
cell line
Organ
465
connective tissue
398
adipose tissue
219
pancreas
184
liver
71
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
48
epithelium
19
eye
17
brain
8
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
1064
AMP
105
T1D
Genome assembly (visualization)
1028
hg19
1026
GRCh38
Lab
986
AMP-T2D consortium
104
Kyle Gaulton, UCSD
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
41
inconsistent ontology term
files.file_type!
fastq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
1169 results
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Clear Filters
total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
195
liver
167
bone tissue
58
kidney
49
+ See 47 more…
primary cell
monocyte
54
hepatocyte
5
osteoblast
5
CD8-positive, alpha-beta T cell
4
B cell
2
+ See 40 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
9
H1-hESC
8
early embryonic cell
2
+ See 4 more…
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