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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
total RNA-seq
78
ChIP-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
123
Transcription
78
DNA binding
DNA accessibility
4
3D chromatin structure
Target of assay
47
histone
47
histone modification
25
broad histone mark
22
narrow histone mark
16
transcription factor
15
control
5
RNA binding protein
Date released
127
May, 2021
30
August, 2021
22
February, 2021
14
August, 2017
8
March, 2020
4
February, 2023
4
October, 2019
2
December, 2019
Available data
273
bam
246
bigWig
fastq
131
tsv
110
bed narrowPeak
40
tagAlign
21
bed bed3+
14
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
211
Homo sapiens
Biosample type
1931
tissue
451
primary cell
211
in vitro differentiated cells
204
cell line
6
stem cell
Organ
25
connective tissue
5
epithelium
3
pancreas
2
embryo
1
heart
Project
211
AMP
Genome assembly (visualization)
137
hg19
130
GRCh38
Lab
167
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
101
inconsistent ontology term
2
audit script error
files.file_type!
fastq
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
211 results
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total RNA-seq
ChIP-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
1
neural progenitor cell
7
21
adipocyte
5
14
1
cardiac precursors (cardiac muscle cell)
19
1
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