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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
total RNA-seq
18
ChIP-seq
17
ATAC-seq
Assay category
112
Transcription
18
DNA binding
17
DNA accessibility
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
4
transcription factor
Date released
84
May, 2021
30
August, 2021
22
February, 2021
5
November, 2019
4
October, 2019
2
March, 2020
Available data
265
bam
243
bigWig
128
bed narrowPeak
127
tsv
fastq
19
bed bed3+
18
tagAlign
15
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
147
Homo sapiens
Biosample type
1539
tissue
307
primary cell
147
in vitro differentiated cells
143
cell line
Organ
5
connective tissue
4
epithelium
2
embryo
2
pancreas
1
heart
Project
147
AMP
Genome assembly (visualization)
179
hg19
147
GRCh38
Lab
147
AMP-T2D consortium
Audit category:
97
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
147 results
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total RNA-seq
ChIP-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
13
10
cardiac precursors (cardiac muscle cell)
19
1
induced pluripotent stem cell
9
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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