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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1061
total RNA-seq
832
ChIP-seq
399
ATAC-seq
233
single cell RNA-seq
198
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
42
pCHi-C
26
Hi-C
18
small RNA-seq
17
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
1
DNAme array
Assay category
1312
Transcription
832
DNA binding
657
DNA accessibility
76
DNA methylation
26
3D chromatin structure
Target of assay
683
histone
683
histone modification
356
narrow histone mark
327
broad histone mark
139
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
548
February, 2021
340
May, 2020
276
October, 2019
246
May, 2021
233
August, 2021
218
June, 2019
176
May, 2022
120
May, 2019
118
July, 2018
110
August, 2017
108
July, 2019
107
February, 2023
82
November, 2017
80
April, 2019
47
September, 2023
41
March, 2020
40
November, 2019
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
October, 2018
15
May, 2023
10
November, 2020
8
December, 2019
6
October, 2017
5
April, 2018
4
March, 2019
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
2516
bam
2345
bigWig
1346
tsv
1239
bed narrowPeak
fastq
670
bigBed narrowPeak
338
tagAlign
262
bed broadPeak
242
bed bed3+
225
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3037
Homo sapiens
Biosample type
2360
tissue
679
primary cell
253
in vitro differentiated cells
235
cell line
6
stem cell
Organ
540
connective tissue
447
adipose tissue
380
pancreas
335
kidney
292
liver
286
heart
265
brain
183
epithelium
164
vasculature
161
blood vessel
159
bone element
122
limb
94
musculature of body
75
artery
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
2582
AMP
235
T1D
155
HPAP
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
1863
hg19
1846
GRCh38
Lab
2358
AMP-T2D consortium
267
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
138
inconsistent ontology term
13
audit script error
files.file_type!
fastq
BIOSAMPLE
ASSAY
3039 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
DNAme array
tissue
adipose tissue
382
3
1
islet of Langerhans
195
43
48
7
4
3
1
4
liver
167
78
20
1
2
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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primary cell
monocyte
54
85
15
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
4
33
2
1
pancreatic beta cell
13
16
1
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