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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
ATAC-seq
127
total RNA-seq
97
ChIP-seq
59
single cell RNA-seq
41
WGBS
30
DNase-seq
29
snATAC-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
228
DNA accessibility
188
Transcription
97
DNA binding
51
DNA methylation
10
3D chromatin structure
Target of assay
77
histone
77
histone modification
44
broad histone mark
33
narrow histone mark
18
control
5
RNA binding protein
5
transcription factor
Date released
147
May, 2020
134
May, 2022
122
May, 2021
55
June, 2019
34
October, 2019
31
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
613
bigWig
609
bam
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
591
Homo sapiens
Biosample type
2137
tissue
591
primary cell
227
cell line
213
in vitro differentiated cells
6
stem cell
Organ
164
epithelium
88
pancreas
36
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
musculature of body
13
heart
12
brain
10
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
315
AMP
155
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
315
hg19
220
GRCh38
Lab
280
AMP-T2D consortium
155
Klaus Kaestner, Upenn
155
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
4
audit script error
files.file_type!
fastq
tagAlign
BIOSAMPLE
ASSAY
591 results
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ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
51
21
monocyte
15
54
1
1
1
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
2
4
33
1
pancreatic beta cell
13
16
1
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