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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
168
ATAC-seq
114
total RNA-seq
56
single cell RNA-seq
41
WGBS
30
DNase-seq
29
snATAC-seq
17
pCHi-C
6
Hi-C
1
DNAme array
1
FAIRE-seq
Assay category
228
DNA accessibility
185
DNA binding
170
Transcription
42
DNA methylation
6
3D chromatin structure
Target of assay
164
histone
164
histone modification
89
broad histone mark
75
narrow histone mark
16
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
55
June, 2019
34
October, 2019
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
591
bam
591
bigWig
fastq
295
bed narrowPeak
252
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
33
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
648
Homo sapiens
Biosample type
2283
tissue
648
primary cell
253
in vitro differentiated cells
235
cell line
6
stem cell
Organ
155
epithelium
88
pancreas
29
kidney
28
connective tissue
26
vasculature
24
blood vessel
22
vein
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
5
brain
4
eye
1
bone element
1
bone marrow
Project
288
AMP
204
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
371
hg19
289
GRCh38
Lab
253
AMP-T2D consortium
239
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
45
inconsistent ontology term
4
audit script error
files.file_type!
fastq
month_released!
July, 2019
BIOSAMPLE
ASSAY
648 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
33
2
4
1
pancreatic beta cell
13
16
1
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