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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
ChIP-seq
168
ATAC-seq
127
total RNA-seq
59
single cell RNA-seq
41
WGBS
29
DNase-seq
29
snATAC-seq
17
pCHi-C
10
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
227
DNA accessibility
188
Transcription
182
DNA binding
50
DNA methylation
10
3D chromatin structure
Target of assay
163
histone
163
histone modification
89
broad histone mark
74
narrow histone mark
18
control
4
RNA binding protein
4
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
51
June, 2019
34
October, 2019
30
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
610
bigWig
605
bam
fastq
292
bed narrowPeak
270
tsv
153
zippedFastqFolder
106
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
674
Homo sapiens
Biosample type
2304
tissue
674
primary cell
253
in vitro differentiated cells
235
cell line
6
stem cell
Organ
168
epithelium
88
pancreas
36
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
314
AMP
204
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
398
hg19
304
GRCh38
Lab
279
AMP-T2D consortium
239
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
47
inconsistent ontology term
4
audit script error
files.file_type!
fastq
organ_slims!
eye
BIOSAMPLE
ASSAY
674 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
33
2
4
1
pancreatic beta cell
13
16
1
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