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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
84
RNA microarray
22
ATAC-seq
8
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
snDrop-seq
2
pCHi-C
1
MPRA
Assay category
551
Transcription
22
DNA accessibility
8
DNA binding
3
3D chromatin structure
Target of assay
5
transcription factor
3
control
Date released
670
February, 2021
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
October, 2022
3
January, 2018
3
March, 2019
1
August, 2022
Available data
572
bam
559
tsv
551
bigWig
90
txt
fastq
23
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
3
bedpe bed3+
3
cool
3
hic
2
bed bed3
2
bed bed3+
Organism
673
Homo sapiens
Biosample type
545
tissue
97
cell line
26
in vitro differentiated cells
6
primary cell
Organ
455
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
29
epithelium
29
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
671
AMP
3
HPAP
Genome assembly (visualization)
577
hg19
568
GRCh38
Lab
671
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
8
audit script error
1
inconsistent replicate
files.file_type!
fastq
bedpe
BIOSAMPLE
ASSAY
674 results
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total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
snDrop-seq
pCHi-C
MPRA
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
MIN6
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
osteoblast
1
1
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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