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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
Hi-C
Assay category
19
3D chromatin structure
Date released
8
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2023
Available data
3212
bam
3019
bigWig
1688
bed narrowPeak
1532
tsv
fastq
963
bigBed narrowPeak
392
tagAlign
309
bed broadPeak
272
bigBed broadPeak
262
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
bedpe
1
tagAlign bed3+
1
vcf
Organism
19
Homo sapiens
Biosample type
9
tissue
4
in vitro differentiated cells
4
primary cell
2
cell line
Organ
6
epithelium
6
pancreas
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
15
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
13
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
files.file_type!
fastq
bedpe
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
19 results
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Hi-C
tissue
psoas muscle
2
heart
1
heart left ventricle
1
heart right ventricle
1
islet of Langerhans
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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