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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
ChIP-seq
32
DNase-seq
17
total RNA-seq
5
Hi-C
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
217
DNA binding
37
DNA accessibility
24
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
192
histone
192
histone modification
119
narrow histone mark
73
broad histone mark
28
control
Date released
107
October, 2019
82
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
12
February, 2020
6
October, 2017
3
March, 2020
1
February, 2023
Available data
263
bam
237
bigWig
216
bed narrowPeak
140
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
37
bed bed3+
26
tsv
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
287
Homo sapiens
Biosample type
253
tissue
34
primary cell
Organ
583
connective tissue
474
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
287
AMP
Genome assembly (visualization)
214
GRCh38
164
hg19
Lab
287
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
files.file_type!
fastq
bedpe
BIOSAMPLE
ASSAY
287 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
single cell RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
brain
11
12
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
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