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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
188
total RNA-seq
158
ATAC-seq
118
single cell RNA-seq
55
snATAC-seq
41
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
Date released
59
August, 2021
59
May, 2021
45
May, 2020
20
May, 2022
5
February, 2023
Available data
106
tsv
102
bam
98
bigWig
fastq
55
txt
2
bed bed3+
Organism
188
Homo sapiens
Biosample type
98
primary cell
76
tissue
9
cell line
5
in vitro differentiated cells
Organ
49
kidney
29
liver
7
pancreas
Project
101
T1D
87
AMP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
109
Kyle Gaulton, UCSD
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
files.file_type!
fastq
bigBed narrowPeak
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
188 results
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total RNA-seq
primary cell
monocyte
53
CD8-positive, alpha-beta T cell
4
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 20 more…
tissue
kidney
49
liver
20
islet of Langerhans
6
pancreas
1
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
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