Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
total RNA-seq
58
ChIP-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
58
DNA binding
Target of assay
24
transcription factor
18
control
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
7
recombinant protein
2
RNA binding protein
Date released
18
August, 2021
17
October, 2019
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
465
bam
fastq
411
bigWig
392
bed narrowPeak
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
58
Homo sapiens
Biosample type
417
tissue
148
primary cell
78
in vitro differentiated cells
58
cell line
Organ
22
pancreas
18
liver
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
56
AMP
2
T1D
Genome assembly (visualization)
39
hg19
25
GRCh38
Lab
40
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
files.file_type!
fastq
bigBed narrowPeak
BIOSAMPLE
ASSAY
58 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
18
EndoC_BH1
15
Panc1
7
smooth muscle cell of the coronary artery
6
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
iPSC derived cell line
2
See all biosamples
Download