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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
total RNA-seq
5
pCHi-C
1
ATAC-seq
Assay category
108
Transcription
1
DNA accessibility
Date released
78
February, 2021
17
August, 2021
9
March, 2020
4
May, 2021
4
October, 2019
1
May, 2020
1
November, 2019
Available data
582
bam
522
bigWig
fastq
404
bed narrowPeak
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
114
Homo sapiens
Biosample type
979
tissue
144
primary cell
116
in vitro differentiated cells
114
cell line
4
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
35
epithelium
34
pancreas
10
liver
8
embryo
6
kidney
1
mammary gland
Project
112
AMP
2
T1D
Genome assembly (visualization)
100
hg19
99
GRCh38
Lab
105
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
files.file_type!
fastq
bigBed narrowPeak
BIOSAMPLE
ASSAY
114 results
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total RNA-seq
pCHi-C
ATAC-seq
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
HepG2
9
1
H1-hESC
8
RCC 7860 vector
1
1
early embryonic cell
2
MCF-7
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
fibroblast cell line
1
glomerular visceral epithelial cell
1
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