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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
50
ChIP-seq
1
pCHi-C
Assay category
190
Transcription
100
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
670
February, 2021
398
May, 2021
341
May, 2020
319
August, 2021
228
October, 2019
135
May, 2022
129
February, 2023
118
July, 2018
116
August, 2017
79
July, 2019
64
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
25
November, 2017
24
February, 2020
23
May, 2019
19
April, 2020
18
September, 2020
16
April, 2019
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
8
June, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
2
October, 2018
1
August, 2022
Available data
283
bam
260
bigWig
189
tsv
50
tagAlign
27
bed narrowPeak
Organism
341
Homo sapiens
Biosample type
193
tissue
147
primary cell
1
cell line
Organ
194
liver
Project
296
AMP
45
T1D
Genome assembly (visualization)
260
hg19
207
GRCh38
Lab
296
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
files.file_type!
fastq
bigBed narrowPeak
organ_slims!
nerve
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
341 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
HepG2
1
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