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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ATAC-seq
22
Hi-C
15
RRBS
4
pCHi-C
2
Capture-C
2
ChIP-seq
1
snATAC-seq
1
total RNA-seq
Assay category
120
DNA accessibility
22
3D chromatin structure
15
DNA methylation
2
DNA binding
1
Transcription
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
42
February, 2023
28
November, 2019
23
February, 2021
15
July, 2019
14
August, 2021
13
May, 2021
12
March, 2020
10
October, 2019
3
March, 2019
3
October, 2022
1
May, 2022
1
May, 2023
1
November, 2020
Available data
bigWig
2998
bam
1598
bed narrowPeak
1402
tsv
fastq
963
bigBed narrowPeak
298
bed broadPeak
262
bigBed broadPeak
250
bed bed3+
238
tagAlign
22
hic
21
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
166
Homo sapiens
Biosample type
84
tissue
38
in vitro differentiated cells
31
primary cell
13
cell line
Organ
31
pancreas
28
eye
26
epithelium
21
connective tissue
13
heart
12
bone element
12
skeleton
12
vasculature
11
blood vessel
8
artery
6
limb
6
liver
5
brain
5
kidney
4
musculature of body
3
adipose tissue
2
vein
1
pericardium
Project
163
AMP
3
HPAP
Genome assembly (visualization)
188
GRCh38
166
hg19
Lab
156
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
2
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
Audit category:
22
inconsistent ontology term
5
audit script error
1
inconsistent replicate
files.file_type!
fastq
bigWig
BIOSAMPLE
ASSAY
166 results
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Clear Filters
ATAC-seq
Hi-C
RRBS
pCHi-C
Capture-C
ChIP-seq
snATAC-seq
total RNA-seq
tissue
islet of Langerhans
21
2
1
retina
15
pigmented layer of retina
12
adipose tissue
1
1
brain
1
1
+ See 25 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
5
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
1
2
1
+ See 5 more…
primary cell
monocyte
13
endothelial cell of umbilical vein
2
osteoblast
1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
1
1
EndoC_BH1
1
1
See all biosamples
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