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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
51
single cell RNA-seq
41
WGBS
29
snATAC-seq
20
ChIP-seq
17
pCHi-C
9
RRBS
6
Hi-C
3
total RNA-seq
2
DNase-seq
1
DNAme array
Assay category
153
DNA accessibility
54
Transcription
51
DNA methylation
20
DNA binding
6
3D chromatin structure
Target of assay
13
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
134
May, 2022
57
May, 2020
35
May, 2021
18
September, 2020
12
February, 2023
11
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
3
October, 2022
1
August, 2021
1
February, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2020
Available data
bigWig
609
bam
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
301
Homo sapiens
Biosample type
907
tissue
301
primary cell
111
in vitro differentiated cells
85
cell line
6
stem cell
Organ
104
epithelium
83
pancreas
8
blood
8
bodily fluid
8
kidney
8
vasculature
7
blood vessel
7
connective tissue
7
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
155
HPAP
121
AMP
24
T1D
1
ITG
Genome assembly (visualization)
31
hg19
17
GRCh38
Lab
155
Klaus Kaestner, Upenn
121
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
16
inconsistent ontology term
4
audit script error
files.file_type!
fastq
bigWig
BIOSAMPLE
ASSAY
301 results
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ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
ChIP-seq
pCHi-C
RRBS
Hi-C
total RNA-seq
DNase-seq
DNAme array
primary cell
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
1
CD4-positive, alpha-beta memory T cell
22
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