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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ChIP-seq
84
RNA microarray
71
ATAC-seq
53
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
141
DNA binding
72
DNA accessibility
66
Transcription
1
DNA methylation
Target of assay
135
control
5
histone
5
histone modification
4
broad histone mark
1
RNA binding protein
1
narrow histone mark
1
transcription factor
Date released
110
February, 2021
75
August, 2021
47
October, 2019
28
November, 2019
23
May, 2019
23
May, 2020
15
April, 2019
14
May, 2021
13
November, 2017
8
June, 2019
4
February, 2023
2
October, 2018
1
July, 2019
1
May, 2022
1
November, 2020
1
October, 2022
Available data
3392
bam
bigWig
1817
bed narrowPeak
1600
tsv
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
365
Homo sapiens
Biosample type
282
tissue
33
primary cell
26
cell line
25
in vitro differentiated cells
Organ
96
bone element
75
kidney
33
pancreas
32
blood vessel
32
vasculature
28
heart
26
liver
23
brain
23
limb
17
artery
15
epithelium
12
skeleton
11
nerve
6
connective tissue
5
vein
4
musculature of body
1
adipose tissue
1
eye
Project
366
AMP
Genome assembly (visualization)
73
hg19
72
GRCh38
Lab
309
AMP-T2D consortium
57
Katalin Susztak, Upenn
Audit category:
105
inconsistent ontology term
6
audit script error
1
inconsistent replicate
files.file_type!
fastq
bigWig
BIOSAMPLE
ASSAY
366 results
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Clear Filters
ChIP-seq
RNA microarray
ATAC-seq
total RNA-seq
single cell RNA-seq
MPRA
WGBS
pCHi-C
snATAC-seq
tissue
bone element
84
kidney
7
49
13
liver
23
islet of Langerhans
19
tibial nerve
11
+ See 44 more…
primary cell
monocyte
13
endothelial cell of umbilical vein
5
cardiac fibroblast
2
epithelial cell of proximal tubule
2
osteoblast
1
1
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
2
8
Panc1
7
EndoC_BH1
2
1
HepG2
1
MIN6
1
+ See 4 more…
in vitro differentiated cells
neural progenitor cell
7
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
pancreatic PP cell
1
See all biosamples
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