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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
17
pCHi-C
11
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
37
DNA binding
DNA accessibility
11
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
60
May, 2021
10
February, 2023
Available data
bigWig
186
bam
114
bed narrowPeak
96
tsv
84
tagAlign
fastq
6
txt
2
bed bed3+
Organism
70
Homo sapiens
Biosample type
42
in vitro differentiated cells
16
primary cell
7
tissue
5
cell line
Organ
6
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
43
AMP
27
T1D
Lab
632
AMP-T2D consortium
95
Klaus Kaestner, Upenn
70
Kyle Gaulton, UCSD
61
Katalin Susztak, Upenn
47
KPMP
23
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
bigWig
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
pCHi-C
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
in vitro differentiated cells
embryonic stem cell
37
5
primary cell
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
+ See 10 more…
tissue
islet of Langerhans
5
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
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