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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
28
snATAC-seq
17
pCHi-C
11
ATAC-seq
11
total RNA-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
39
DNA accessibility
37
DNA binding
20
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
60
May, 2021
23
February, 2023
19
April, 2020
16
January, 2021
Available data
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
fastq
6
txt
2
bed bed3+
Organism
117
Homo sapiens
Biosample type
47
tissue
42
in vitro differentiated cells
24
primary cell
5
cell line
Organ
27
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
56
T1D
43
AMP
19
LungMap
Lab
885
AMP-T2D consortium
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
bigWig
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
total RNA-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
6
11
5
lung
10
9
pancreas
4
1
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC_BH1
3
2
See all biosamples
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