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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
3
WGBS
3
total RNA-seq
2
ATAC-seq
1
RNA microarray
1
pCHi-C
Assay category
35
DNA binding
3
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
5
control
Date released
38
August, 2017
2
February, 2020
1
August, 2021
1
February, 2023
1
March, 2020
1
May, 2023
1
November, 2019
Available data
442
bam
bigWig
401
tsv
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
44
Homo sapiens
Biosample type
45
tissue
Organ
223
kidney
209
pancreas
169
heart
149
epithelium
101
bone element
97
liver
87
connective tissue
81
vasculature
80
blood vessel
61
brain
56
artery
55
eye
45
adipose tissue
31
limb
26
musculature of body
20
lung
16
skeleton
12
nerve
8
blood
8
bodily fluid
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
45
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
bigWig
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
WGBS
total RNA-seq
ATAC-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
35
3
adipose tissue
1
1
1
subcutaneous adipose tissue
1
1
adipose tissue(adipose white tissue)
1
omental fat pad
1
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