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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
43
DNA binding
12
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
23
control
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
25
November, 2017
12
February, 2020
10
October, 2019
6
October, 2017
3
May, 2019
2
July, 2019
2
March, 2020
1
February, 2023
Available data
243
bam
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
61
Homo sapiens
Biosample type
60
tissue
1
primary cell
Organ
223
kidney
209
pancreas
169
heart
149
epithelium
101
bone element
97
liver
87
connective tissue
81
vasculature
80
blood vessel
61
brain
56
artery
55
eye
45
adipose tissue
31
limb
26
musculature of body
20
lung
16
skeleton
12
nerve
8
blood
8
bodily fluid
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
5
hg19
3
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
bigWig
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
total RNA-seq
ATAC-seq
RRBS
pCHi-C
tissue
brain
6
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 22 more…
primary cell
choroid plexus epithelial cell
1
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