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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
16
ATAC-seq
7
total RNA-seq
4
pCHi-C
3
WGBS
2
Capture-C
1
RNA microarray
1
RRBS
Assay category
53
DNA binding
16
DNA accessibility
7
Transcription
4
DNA methylation
Target of assay
43
histone
43
histone modification
28
broad histone mark
15
narrow histone mark
10
control
Date released
52
August, 2017
14
February, 2023
5
February, 2021
3
August, 2021
3
June, 2019
2
February, 2020
2
March, 2020
1
July, 2019
1
May, 2021
1
May, 2023
1
November, 2019
1
November, 2020
1
October, 2019
Available data
593
bam
bigWig
478
tsv
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
86
Homo sapiens
Biosample type
46
tissue
33
in vitro differentiated cells
7
primary cell
1
stem cell
Organ
223
kidney
209
pancreas
169
heart
149
epithelium
101
bone element
97
liver
87
connective tissue
81
vasculature
80
blood vessel
61
brain
56
artery
55
eye
45
adipose tissue
31
limb
26
musculature of body
20
lung
16
skeleton
12
nerve
8
blood
8
bodily fluid
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
86
AMP
1
T1D
Genome assembly (visualization)
21
hg19
3
GRCh38
Lab
84
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
files.file_type!
fastq
bigWig
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
WGBS
Capture-C
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
35
3
adipose tissue
1
1
1
subcutaneous adipose tissue
1
1
adipose tissue(adipose white tissue)
1
islet of Langerhans
1
+ See 1 more…
in vitro differentiated cells
adipocyte
14
5
1
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
osteoblast
1
primary cell
cardiac fibroblast
2
1
osteoblast
1
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
stem cell
mesenchymal stem cell
1
See all biosamples
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