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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
30
DNase-seq
3
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
200
DNA binding
34
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
177
histone
177
histone modification
113
narrow histone mark
64
broad histone mark
23
control
Date released
85
October, 2019
82
November, 2017
30
June, 2019
28
May, 2019
7
July, 2019
6
October, 2017
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
tsv
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
239
Homo sapiens
Biosample type
230
tissue
9
primary cell
Organ
330
kidney
258
pancreas
239
brain
225
heart
211
epithelium
162
vasculature
159
blood vessel
157
liver
115
limb
108
connective tissue
101
bone element
85
musculature of body
83
artery
56
eye
46
adipose tissue
nerve
22
vein
19
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
239
AMP
Genome assembly (visualization)
190
GRCh38
135
hg19
Lab
239
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
tsv
organ_slims!
nerve
BIOSAMPLE
ASSAY
239 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
brain
11
12
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
choroid plexus epithelial cell
1
1
astrocyte of the hippocampus
1
See all biosamples
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