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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
17
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
single cell RNA-seq
Assay category
105
DNA accessibility
18
Transcription
3
3D chromatin structure
Date released
670
February, 2021
399
May, 2021
341
May, 2020
314
October, 2019
255
August, 2021
218
June, 2019
176
May, 2022
129
February, 2023
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
fastq
65
bed narrowPeak
16
tsv
10
bed bed3
8
txt
4
bed bed3+
3
bed bedgraph
3
bedpe bed3+
3
bigWig
3
cool
3
hic
Organism
131
Homo sapiens
Biosample type
95
tissue
16
in vitro differentiated cells
15
primary cell
7
cell line
Organ
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
22
pancreas
18
epithelium
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
107
AMP
23
T1D
3
HPAP
Genome assembly (visualization)
48
hg19
35
GRCh38
Lab
104
AMP-T2D consortium
23
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
3
audit script error
files.file_type!
fastq
xls
BIOSAMPLE
ASSAY
133 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
single cell RNA-seq
tissue
coronary artery
35
islet of Langerhans
11
5
2
retina
15
2
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
+ See 6 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
pancreatic acinar cell
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
MIN6
1
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