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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
4
ATAC-seq
3
ChIP-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
5
3D chromatin structure
5
DNA accessibility
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
5
August, 2021
4
February, 2023
4
July, 2019
2
February, 2021
2
May, 2021
1
May, 2022
1
October, 2019
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
fastq
1042
bigBed narrowPeak
398
tagAlign
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
19
Homo sapiens
Biosample type
10
primary cell
6
in vitro differentiated cells
2
cell line
1
tissue
Organ
8
connective tissue
5
epithelium
5
liver
3
brain
2
blood vessel
2
vasculature
1
musculature of body
1
pancreas
Project
19
AMP
Genome assembly (visualization)
19
hg19
4
GRCh38
Lab
15
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
fastq
bed broadPeak
BIOSAMPLE
ASSAY
19 results
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Clear Filters
Hi-C
ATAC-seq
ChIP-seq
Capture-C
pCHi-C
total RNA-seq
snATAC-seq
primary cell
hepatocyte
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 2 more…
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
cell line
HepG2
1
Panc1
1
tissue
skeletal muscle tissue
1
See all biosamples
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