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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
total RNA-seq
44
ChIP-seq
5
DNase-seq
5
single cell RNA-seq
4
ATAC-seq
2
small RNA-seq
1
Hi-C
Assay category
212
Transcription
44
DNA binding
9
DNA accessibility
1
3D chromatin structure
Target of assay
42
histone
42
histone modification
21
broad histone mark
21
narrow histone mark
2
transcription factor
1
RNA binding protein
Date released
114
July, 2018
43
May, 2021
31
November, 2019
26
February, 2021
14
October, 2018
10
March, 2020
8
October, 2019
6
August, 2017
5
April, 2018
4
July, 2019
4
June, 2019
1
May, 2019
Available data
689
bam
623
bigWig
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
266
Homo sapiens
Biosample type
203
tissue
56
cell line
5
primary cell
2
in vitro differentiated cells
Organ
496
connective tissue
402
adipose tissue
266
pancreas
229
liver
204
brain
184
heart
149
vasculature
147
blood vessel
131
kidney
118
epithelium
91
limb
85
artery
68
musculature of body
58
bone element
31
nerve
18
ureter
15
vein
10
embryo
6
eye
1
blood
1
bodily fluid
1
pericardium
1
pituitary gland
Project
260
AMP
6
T1D
Genome assembly (visualization)
264
hg19
256
GRCh38
Lab
266
AMP-T2D consortium
Audit category:
48
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
fastq
BIOSAMPLE
ASSAY
266 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
Hi-C
tissue
islet of Langerhans
169
8
2
endocrine pancreas
14
body of pancreas
2
1
2
2
pancreas
1
2
cell line
EndoC_BH1
33
13
2
Panc1
6
1
1
primary cell
pancreatic acinar cell
3
pancreatic ductal cell
1
pancreatic stellate cell
1
in vitro differentiated cells
pancreatic PP cell
2
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