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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
4
pCHi-C
2
Capture-C
1
snATAC-seq
Assay category
5
DNA accessibility
Date released
4
February, 2023
2
August, 2021
2
February, 2021
2
March, 2020
1
May, 2022
Available data
3392
bam
bigWig
1817
bed narrowPeak
1600
tsv
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
11
Homo sapiens
Biosample type
8
in vitro differentiated cells
1
cell line
1
primary cell
1
tissue
Organ
7
connective tissue
1
liver
1
musculature of body
Project
11
AMP
Genome assembly (visualization)
11
hg19
Lab
9
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
1
audit script error
files.file_type!
fastq
bigWig
BIOSAMPLE
ASSAY
11 results
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ATAC-seq
pCHi-C
Capture-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
osteoblast
1
+ See 1 more…
cell line
HepG2
1
primary cell
osteoblast
1
tissue
skeletal muscle tissue
1
See all biosamples
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