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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
271
ChIP-seq
Assay category
271
DNA binding
Target of assay
199
histone
199
histone modification
119
narrow histone mark
80
broad histone mark
63
control
9
transcription factor
Date released
66
August, 2017
66
November, 2017
50
May, 2020
49
October, 2019
20
August, 2021
8
February, 2021
6
May, 2021
6
October, 2017
Available data
2783
bam
2556
bigWig
1522
bed narrowPeak
1330
tsv
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
0
zippedFastqFolder
Organism
271
Homo sapiens
Biosample type
primary cell
223
tissue
40
in vitro differentiated cells
8
cell line
Organ
110
brain
70
liver
22
connective tissue
15
musculature of body
12
pancreas
8
adipose tissue
6
artery
6
blood vessel
6
heart
6
vasculature
3
epithelium
1
pituitary gland
Project
271
AMP
Genome assembly (visualization)
127
GRCh38
115
hg19
Lab
271
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
fastq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
271 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 42 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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