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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ATAC-seq
5
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
Assay category
16
DNA accessibility
5
Transcription
Date released
235
May, 2021
174
May, 2022
168
August, 2021
47
September, 2023
45
May, 2020
26
February, 2023
19
April, 2020
18
September, 2020
16
January, 2021
14
May, 2023
10
November, 2020
5
March, 2023
4
March, 2019
3
October, 2022
Available data
fastq
3
bed bedgraph
3
bigWig
3
txt
2
bed narrowPeak
Organism
26
Homo sapiens
Biosample type
18
tissue
5
cell line
3
in vitro differentiated cells
Organ
18
pancreas
Project
23
T1D
3
AMP
Genome assembly (visualization)
3
hg19
Lab
AMP-T2D consortium
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
26 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
tissue
islet of Langerhans
11
5
2
cell line
EndoC_BH1
3
2
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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